J3_8VSA_019
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8VSA|1|5S|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VSA_019 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2508
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8VSA|1|5S|G|10
8VSA|1|5S|C|11
8VSA|1|5S|C|12
8VSA|1|5S|G|13
8VSA|1|5S|U|14
8VSA|1|5S|A|15
8VSA|1|5S|G|16
*
8VSA|1|5S|C|68
8VSA|1|5S|G|69
8VSA|1|5S|C|70
*
8VSA|1|5S|G|106
8VSA|1|5S|G|107
8VSA|1|5S|A|108
8VSA|1|5S|A|109
8VSA|1|5S|C|110
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L18
- 50S ribosomal protein L18
- Chain L25
- 50S ribosomal protein L25
- Chain L27
- 50S ribosomal protein L27
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