J3_8VSA_025

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VSA_025 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1944

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VSA|1|16S|U|943
8VSA|1|16S|G|944
8VSA|1|16S|G|945
8VSA|1|16S|A|946
*
8VSA|1|16S|U|1235
8VSA|1|16S|A|1236
8VSA|1|16S|C|1237
*
8VSA|1|16S|G|1337
8VSA|1|16S|G|1338
8VSA|1|16S|A|1339
8VSA|1|16S|A|1340

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S09

Small ribosomal subunit protein uS9

Chain S13

30S ribosomal protein S13

Chain SMPB

SsrA-binding protein