J3_8VSA_026

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VSA|1|16S|U|1212, 8VSA|1|16S|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VSA_026 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1961

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VSA|1|16S|C|990
8VSA|1|16S|U|991
8VSA|1|16S|U|992
8VSA|1|16S|G|993
8VSA|1|16S|A|994
8VSA|1|16S|C|995
8VSA|1|16S|A|996
8VSA|1|16S|U|997
*
8VSA|1|16S|A|1044
8VSA|1|16S|C|1045
8VSA|1|16S|A|1046
8VSA|1|16S|G|1047
*
8VSA|1|16S|C|1210
8VSA|1|16S|U|1211
8VSA|1|16S|U|1212
8VSA|1|16S|A|1213
8VSA|1|16S|C|1214
8VSA|1|16S|G|1215

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S14

Small ribosomal subunit protein uS14