J3_8VSA_033

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

8VSA|1|23S|U|72, 8VSA|1|23S|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VSA_033 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.128

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8VSA|1|23S|A|56
8VSA|1|23S|C|57
*
8VSA|1|23S|G|70
8VSA|1|23S|A|71
8VSA|1|23S|U|72
8VSA|1|23S|A|73
8VSA|1|23S|A|74
8VSA|1|23S|G|75
8VSA|1|23S|C|76
*
8VSA|1|23S|G|110
8VSA|1|23S|A|111
8VSA|1|23S|U|112
8VSA|1|23S|U|113
8VSA|1|23S|U|114

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23

Chain L29

50S ribosomal protein L29

Chain L34

50S ribosomal protein L34