J3_8VSA_034

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8VSA|1|23S|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VSA_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1276

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VSA|1|23S|G|297
8VSA|1|23S|G|298
8VSA|1|23S|A|299
8VSA|1|23S|A|300
8VSA|1|23S|G|301
*
8VSA|1|23S|C|316
8VSA|1|23S|G|317
8VSA|1|23S|C|318
8VSA|1|23S|G|319
8VSA|1|23S|A|320
8VSA|1|23S|U|321
8VSA|1|23S|A|322
8VSA|1|23S|C|323
8VSA|1|23S|A|324
8VSA|1|23S|G|325
*
8VSA|1|23S|C|337
8VSA|1|23S|G|338
8VSA|1|23S|U|339
8VSA|1|23S|A|340
8VSA|1|23S|C|341

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L24

50S ribosomal protein L24