J3_8VSA_040
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8VSA|1|16S|U|1183
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VSA_040 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1762
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VSA|1|16S|U|1116
8VSA|1|16S|A|1117
8VSA|1|16S|U|1118
*
8VSA|1|16S|A|1155
8VSA|1|16S|G|1156
8VSA|1|16S|A|1157
8VSA|1|16S|C|1158
8VSA|1|16S|U|1159
8VSA|1|16S|G|1160
8VSA|1|16S|C|1161
*
8VSA|1|16S|G|1175
8VSA|1|16S|A|1176
8VSA|1|16S|G|1177
8VSA|1|16S|G|1178
8VSA|1|16S|A|1179
8VSA|1|16S|A|1180
8VSA|1|16S|G|1181
8VSA|1|16S|G|1182
8VSA|1|16S|U|1183
8VSA|1|16S|G|1184
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S02
- 30S ribosomal protein S2
- Chain S07
- 30S ribosomal protein S7
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S10
- 30S ribosomal protein S10
- Chain S14
- Small ribosomal subunit protein uS14
Coloring options: