J3_8VTU_073

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

8VTU|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTU_073 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1152

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8VTU|1|2a|C|1116
8VTU|1|2a|G|1117
8VTU|1|2a|C|1118
*
8VTU|1|2a|G|1155
8VTU|1|2a|G|1156
8VTU|1|2a|A|1157
8VTU|1|2a|C|1158
8VTU|1|2a|U|1159
8VTU|1|2a|G|1160
8VTU|1|2a|C|1161
*
8VTU|1|2a|G|1175
8VTU|1|2a|A|1176
8VTU|1|2a|G|1177
8VTU|1|2a|G|1178
8VTU|1|2a|A|1179
8VTU|1|2a|A|1180
8VTU|1|2a|G|1181
8VTU|1|2a|G|1182
8VTU|1|2a|A|1183
8VTU|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z