J3_8VTV_004

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_004 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.0497

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

8VTV|1|1A|C|1298
8VTV|1|1A|G|1299
8VTV|1|1A|U|1300
8VTV|1|1A|A|1301
8VTV|1|1A|A|1302
8VTV|1|1A|G|1303
*
8VTV|1|1A|C|1625
8VTV|1|1A|G|1626
8VTV|1|1A|G|1627
*
8VTV|1|1A|U|1639
8VTV|1|1A|C|1640
8VTV|1|1A|A|1641
8VTV|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains