J3_8VTV_025
3D structure
- PDB id
- 8VTV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CUCAG*CGGAGAG*UAGAAG
- Length
- 18 nucleotides
- Bulged bases
- 8VTV|1|2A|G|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VTV_025 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.5372
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8VTV|1|2A|C|2295
8VTV|1|2A|U|2296
8VTV|1|2A|C|2297
8VTV|1|2A|A|2298
8VTV|1|2A|G|2299
*
8VTV|1|2A|C|2317
8VTV|1|2A|G|2318
8VTV|1|2A|G|2319
8VTV|1|2A|A|2320
8VTV|1|2A|G|2321
8VTV|1|2A|A|2322
8VTV|1|2A|G|2323
*
8VTV|1|2A|U|2332
8VTV|1|2A|A|2333
8VTV|1|2A|G|2334
8VTV|1|2A|A|2335
8VTV|1|2A|A|2336
8VTV|1|2A|G|2337
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2G
- 50S ribosomal protein L5
- Chain 2S
- 50S ribosomal protein L18
- Chain 2x
- Transfer RNA; tRNA
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