3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GC*GGAAUCU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VTV_047 not in the Motif Atlas
Geometric match to J3_4LFB_010
Geometric discrepancy: 0.0725
The information below is about J3_4LFB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8VTV|1|1a|G|46
8VTV|1|1a|C|47
*
8VTV|1|1a|G|361
8VTV|1|1a|G|362
8VTV|1|1a|A|363
8VTV|1|1a|A|364
8VTV|1|1a|U|365
8VTV|1|1a|C|366
8VTV|1|1a|U|367
*
8VTV|1|1a|A|393
8VTV|1|1a|G|394
8VTV|1|1a|C|395

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1l
30S ribosomal protein S12
Chain 1p
30S ribosomal protein S16

Coloring options:


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