J3_8VTW_015

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTW_015 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.2365

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTW|1|1a|G|1002
8VTW|1|1a|G|1003
8VTW|1|1a|A|1004
8VTW|1|1a|A|1005
8VTW|1|1a|C|1006
*
8VTW|1|1a|G|1023
8VTW|1|1a|G|1024
8VTW|1|1a|U|1025
8VTW|1|1a|G|1026
8VTW|1|1a|C|1027
8VTW|1|1a|C|1028
*
8VTW|1|1a|G|1033
8VTW|1|1a|G|1034
8VTW|1|1a|A|1035
8VTW|1|1a|G|1036
8VTW|1|1a|C|1037
8VTW|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains