3D structure

PDB id
8VTW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.35 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8VTW|1|1A|U|448, 8VTW|1|1A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_24554.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
7

Unit IDs

8VTW|1|1A|C|32
8VTW|1|1A|U|33
8VTW|1|1A|C|34
8VTW|1|1A|G|35
*
8VTW|1|1A|C|445
8VTW|1|1A|G|446
8VTW|1|1A|A|447
8VTW|1|1A|U|448
8VTW|1|1A|A|449
8VTW|1|1A|G|450
8VTW|1|1A|C|451
8VTW|1|1A|G|452
8VTW|1|1A|C|453
8VTW|1|1A|A|454
8VTW|1|1A|C|455
8VTW|1|1A|C|456
8VTW|1|1A|A|457
8VTW|1|1A|G|458
8VTW|1|1A|U|459
8VTW|1|1A|A|460
8VTW|1|1A|C|461
*
8VTW|1|1A|G|468
8VTW|1|1A|G|469
8VTW|1|1A|A|470
8VTW|1|1A|A|471
8VTW|1|1A|A|472
8VTW|1|1A|G|473

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1F
50S ribosomal protein L4
Chain 1U
50S ribosomal protein L20
Chain 1X
50S ribosomal protein L23

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.315 s