J3_8VTW_058

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

8VTW|1|2A|U|72, 8VTW|1|2A|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTW_058 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.0602

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8VTW|1|2A|A|56
8VTW|1|2A|C|57
*
8VTW|1|2A|G|70
8VTW|1|2A|A|71
8VTW|1|2A|U|72
8VTW|1|2A|A|73
8VTW|1|2A|A|74
8VTW|1|2A|G|75
8VTW|1|2A|C|76
*
8VTW|1|2A|G|110
8VTW|1|2A|A|111
8VTW|1|2A|U|112
8VTW|1|2A|G|113
8VTW|1|2A|U|114

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23