J3_8VTX_075

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGA*UUUAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

8VTX|1|1A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTX|1|1A|G|1055
8VTX|1|1A|G|1056
8VTX|1|1A|A|1057
*
8VTX|1|1A|U|1081
8VTX|1|1A|U|1082
8VTX|1|1A|U|1083
8VTX|1|1A|A|1084
8VTX|1|1A|A|1085
8VTX|1|1A|A|1086
8VTX|1|1A|G|1087
8VTX|1|1A|A|1088
8VTX|1|1A|G|1089
8VTX|1|1A|U|1090
8VTX|1|1A|G|1091
*
8VTX|1|1A|C|1100
8VTX|1|1A|U|1101
8VTX|1|1A|C|1102
8VTX|1|1A|A|1103
8VTX|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36