J3_8VTY_015

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTY_015 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.1896

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTY|1|1a|G|1002
8VTY|1|1a|G|1003
8VTY|1|1a|A|1004
8VTY|1|1a|A|1005
8VTY|1|1a|C|1006
*
8VTY|1|1a|G|1023
8VTY|1|1a|G|1024
8VTY|1|1a|U|1025
8VTY|1|1a|G|1026
8VTY|1|1a|C|1027
8VTY|1|1a|C|1028
*
8VTY|1|1a|G|1033
8VTY|1|1a|G|1034
8VTY|1|1a|A|1035
8VTY|1|1a|G|1036
8VTY|1|1a|C|1037
8VTY|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains