J3_8VUP_017

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8VUP|1|1|U|2833, 8VUP|1|1|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|1|G|2812
8VUP|1|1|A|2813
8VUP|1|1|A|2814
8VUP|1|1|C|2815
*
8VUP|1|1|G|2831
8VUP|1|1|U|2832
8VUP|1|1|U|2833
8VUP|1|1|G|2834
8VUP|1|1|A|2835
8VUP|1|1|U|2836
*
8VUP|1|1|A|2882
8VUP|1|1|A|2883
8VUP|1|1|U|2884
8VUP|1|1|G|2885
8VUP|1|1|A|2886
8VUP|1|1|A|2887
8VUP|1|1|C|2888

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32