J3_8VUP_023

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCACAAG*CUAGUAA*UGAAUACGUUCCC

Length

27 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|G|933
8VUP|1|2|C|934
8VUP|1|2|A|935
8VUP|1|2|C|936
8VUP|1|2|A|937
8VUP|1|2|A|938
8VUP|1|2|G|939
*
8VUP|1|2|C|1344
8VUP|1|2|U|1345
8VUP|1|2|A|1346
8VUP|1|2|G|1347
8VUP|1|2|U|1348
8VUP|1|2|A|1349
8VUP|1|2|A|1350
*
8VUP|1|2|U|1372
8VUP|1|2|G|1373
8VUP|1|2|A|1374
8VUP|1|2|A|1375
8VUP|1|2|U|1376
8VUP|1|2|A|1377
8VUP|1|2|C|1378
8VUP|1|2|G|1379
8VUP|1|2|U|1380
8VUP|1|2|U|1381
8VUP|1|2|C|1382
8VUP|1|2|C|1383
8VUP|1|2|C|1384

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9