J3_8VUP_024

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VUP_024 not in the Motif Atlas

Geometric match to J3_8CRE_079

Geometric discrepancy: 0.158

The information below is about J3_8CRE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VUP|1|2|U|943
8VUP|1|2|G|944
8VUP|1|2|G|945
8VUP|1|2|A|946
*
8VUP|1|2|U|1235
8VUP|1|2|A|1236
8VUP|1|2|C|1237
*
8VUP|1|2|G|1337
8VUP|1|2|G|1338
8VUP|1|2|A|1339
8VUP|1|2|A|1340

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

Small ribosomal subunit protein uS9

Chain r

30S ribosomal protein S13