J3_8VUP_031

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAU*AGACUGC*GAGGAAGGUGGG

Length

24 nucleotides

Bulged bases

8VUP|1|2|U|1183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|C|1114
8VUP|1|2|U|1115
8VUP|1|2|U|1116
8VUP|1|2|A|1117
8VUP|1|2|U|1118
*
8VUP|1|2|A|1155
8VUP|1|2|G|1156
8VUP|1|2|A|1157
8VUP|1|2|C|1158
8VUP|1|2|U|1159
8VUP|1|2|G|1160
8VUP|1|2|C|1161
*
8VUP|1|2|G|1175
8VUP|1|2|A|1176
8VUP|1|2|G|1177
8VUP|1|2|G|1178
8VUP|1|2|A|1179
8VUP|1|2|A|1180
8VUP|1|2|G|1181
8VUP|1|2|G|1182
8VUP|1|2|U|1183
8VUP|1|2|G|1184
8VUP|1|2|G|1185
8VUP|1|2|G|1186

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS3

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9

Chain o

30S ribosomal protein S10

Chain s

Small ribosomal subunit protein uS14