J3_8VUP_032

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

8VUP|1|2|U|1240, 8VUP|1|2|C|1302, 8VUP|1|2|U|1307

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|C|1237
8VUP|1|2|A|1238
8VUP|1|2|A|1239
8VUP|1|2|U|1240
8VUP|1|2|G|1241
*
8VUP|1|2|C|1296
8VUP|1|2|G|1297
8VUP|1|2|U|1298
8VUP|1|2|A|1299
8VUP|1|2|G|1300
8VUP|1|2|U|1301
8VUP|1|2|C|1302
8VUP|1|2|C|1303
8VUP|1|2|G|1304
8VUP|1|2|G|1305
8VUP|1|2|A|1306
8VUP|1|2|U|1307
8VUP|1|2|U|1308
*
8VUP|1|2|A|1329
8VUP|1|2|U|1330
8VUP|1|2|G|1331
8VUP|1|2|A|1332
8VUP|1|2|A|1333
8VUP|1|2|G|1334
8VUP|1|2|U|1335
8VUP|1|2|C|1336
8VUP|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13

Chain x

30S ribosomal protein S19