J3_8VV4_004
3D structure
- PDB id
- 8VV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 8VV4|1|1|U|72, 8VV4|1|1|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VV4_004 not in the Motif Atlas
- Geometric match to J3_4V9F_014
- Geometric discrepancy: 0.0914
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VV4|1|1|A|56
8VV4|1|1|C|57
*
8VV4|1|1|G|70
8VV4|1|1|A|71
8VV4|1|1|U|72
8VV4|1|1|A|73
8VV4|1|1|A|74
8VV4|1|1|G|75
8VV4|1|1|C|76
*
8VV4|1|1|G|110
8VV4|1|1|A|111
8VV4|1|1|U|112
8VV4|1|1|U|113
8VV4|1|1|U|114
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
- Chain d
- 50S ribosomal protein L34
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