J3_8VV4_023

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VV4_023 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.1153

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8VV4|1|2|C|936
8VV4|1|2|A|937
8VV4|1|2|A|938
8VV4|1|2|G|939
*
8VV4|1|2|C|1344
8VV4|1|2|U|1345
8VV4|1|2|A|1346
8VV4|1|2|G|1347
8VV4|1|2|U|1348
8VV4|1|2|A|1349
8VV4|1|2|A|1350
*
8VV4|1|2|U|1372
8VV4|1|2|G|1373
8VV4|1|2|A|1374
8VV4|1|2|A|1375
8VV4|1|2|U|1376
8VV4|1|2|A|1377
8VV4|1|2|C|1378
8VV4|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9