J3_8VVP_001

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8VVP|1|WA|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|C|112
8VVP|1|WA|A|113
8VVP|1|WA|G|114
8VVP|1|WA|C|115
8VVP|1|WA|G|116
*
8VVP|1|WA|C|155
8VVP|1|WA|G|156
8VVP|1|WA|U|157
8VVP|1|WA|A|158
8VVP|1|WA|C|159
8VVP|1|WA|G|160
*
8VVP|1|WA|C|275
8VVP|1|WA|C|276
8VVP|1|WA|G|277
8VVP|1|WA|G|278

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

L7A

Chain GA

L35

Chain HA

L36

Chain K

L13

Chain M

L15