J3_8VVP_002

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8VVP|1|WA|C|216, 8VVP|1|WA|C|217, 8VVP|1|WA|A|218, 8VVP|1|WA|G|219, 8VVP|1|WA|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|C|196
8VVP|1|WA|A|197
8VVP|1|WA|A|198
8VVP|1|WA|G|199
*
8VVP|1|WA|C|215
8VVP|1|WA|C|216
8VVP|1|WA|C|217
8VVP|1|WA|A|218
8VVP|1|WA|G|219
8VVP|1|WA|C|220
8VVP|1|WA|C|221
8VVP|1|WA|C|222
8VVP|1|WA|G|223
8VVP|1|WA|U|224
8VVP|1|WA|G|225
8VVP|1|WA|G|226
8VVP|1|WA|A|227
8VVP|1|WA|C|228
*
8VVP|1|WA|G|240
8VVP|1|WA|G|241
8VVP|1|WA|U|242
8VVP|1|WA|A|243
8VVP|1|WA|G|244

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26