J3_8VVP_003
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8VVP|1|WA|U|354, 8VVP|1|WA|A|362, 8VVP|1|YA|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_003 not in the Motif Atlas
- Geometric match to J3_8P9A_045
- Geometric discrepancy: 0.0595
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8VVP|1|WA|C|351
8VVP|1|WA|G|352
8VVP|1|WA|A|353
8VVP|1|WA|U|354
8VVP|1|WA|A|355
8VVP|1|WA|G|356
8VVP|1|WA|U|357
8VVP|1|WA|C|358
8VVP|1|WA|A|359
8VVP|1|WA|A|360
8VVP|1|WA|C|361
8VVP|1|WA|A|362
8VVP|1|WA|A|363
8VVP|1|WA|G|364
8VVP|1|WA|U|365
8VVP|1|WA|A|366
8VVP|1|WA|C|367
*
8VVP|1|WA|G|374
8VVP|1|WA|G|375
8VVP|1|WA|A|376
8VVP|1|WA|A|377
8VVP|1|WA|A|378
8VVP|1|WA|G|379
*
8VVP|1|YA|C|21
8VVP|1|YA|U|22
8VVP|1|YA|C|23
8VVP|1|YA|G|24
Current chains
- Chain WA
- 28S rRNA
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain C
- uL4
- Chain IA
- L37
- Chain KA
- eL39
- Chain X
- L26
Coloring options: