J3_8VVP_006

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8VVP|1|WA|C|705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|C|451
8VVP|1|WA|A|452
8VVP|1|WA|G|453
8VVP|1|WA|U|454
8VVP|1|WA|C|455
*
8VVP|1|WA|G|702
8VVP|1|WA|U|703
8VVP|1|WA|G|704
8VVP|1|WA|C|705
8VVP|1|WA|G|706
*
8VVP|1|WA|C|1294
8VVP|1|WA|G|1295
8VVP|1|WA|A|1296
8VVP|1|WA|U|1297
8VVP|1|WA|G|1298

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain E

L6

Chain EA

eL33

Chain PA

L28