J3_8VVP_014
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 8VVP|1|WA|C|2472, 8VVP|1|WA|A|2474, 8VVP|1|WA|G|2477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVP|1|WA|A|2453
8VVP|1|WA|G|2454
8VVP|1|WA|A|2455
8VVP|1|WA|U|2456
8VVP|1|WA|G|2457
8VVP|1|WA|G|2458
*
8VVP|1|WA|C|2467
8VVP|1|WA|G|2468
8VVP|1|WA|U|2469
8VVP|1|WA|U|2470
8VVP|1|WA|C|2471
8VVP|1|WA|C|2472
8VVP|1|WA|G|2473
8VVP|1|WA|A|2474
8VVP|1|WA|A|2475
8VVP|1|WA|G|2476
8VVP|1|WA|G|2477
8VVP|1|WA|G|2478
*
8VVP|1|WA|C|2503
8VVP|1|WA|A|2504
8VVP|1|WA|G|2505
8VVP|1|WA|C|2506
8VVP|1|WA|C|2507
8VVP|1|WA|G|2508
8VVP|1|WA|A|2509
8VVP|1|WA|U|2510
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL3
- Chain G
- L7A
- Chain IA
- L37
- Chain M
- L15
- Chain W
- uL23
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: