J3_8VVP_020

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

8VVP|1|WA|U|4376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|G|4230
8VVP|1|WA|U|4231
8VVP|1|WA|C|4232
*
8VVP|1|WA|G|4333
8VVP|1|WA|C|4334
8VVP|1|WA|C|4335
8VVP|1|WA|U|4336
8VVP|1|WA|C|4337
8VVP|1|WA|A|4338
8VVP|1|WA|C|4339
8VVP|1|WA|G|4340
8VVP|1|WA|A|4341
8VVP|1|WA|U|4342
8VVP|1|WA|C|4343
8VVP|1|WA|C|4344
*
8VVP|1|WA|G|4372
8VVP|1|WA|G|4373
8VVP|1|WA|U|4374
8VVP|1|WA|G|4375
8VVP|1|WA|U|4376
8VVP|1|WA|C|4377

Current chains

Chain WA

28S rRNA

Nearby chains

Chain NA

eL42

Chain P

eL18

Chain S

eL21

Chain TA

Transfer RNA; tRNA

Chain Z

L27a