J3_8VVP_028

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8VVP|1|ZA|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVP_028 not in the Motif Atlas

Geometric match to J3_8CRE_072

Geometric discrepancy: 0.0572

The information below is about J3_8CRE_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVP|1|ZA|A|40
8VVP|1|ZA|G|41
8VVP|1|ZA|A|42
8VVP|1|ZA|U|43
8VVP|1|ZA|U|44
8VVP|1|ZA|A|45
8VVP|1|ZA|A|46
8VVP|1|ZA|G|47
*
8VVP|1|ZA|C|479
8VVP|1|ZA|G|480
8VVP|1|ZA|C|481
8VVP|1|ZA|G|482
8VVP|1|ZA|C|483
8VVP|1|ZA|A|484
8VVP|1|ZA|A|485
8VVP|1|ZA|A|486
8VVP|1|ZA|U|487
*
8VVP|1|ZA|A|512
8VVP|1|ZA|G|513
8VVP|1|ZA|U|514

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HC

eukaryotic elongation factor 1A

Chain JB

S9

Chain XB

S23