J3_8VVP_029
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8VVP|1|ZA|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_029 not in the Motif Atlas
- Geometric match to J3_8P9A_072
- Geometric discrepancy: 0.1138
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|ZA|U|682
8VVP|1|ZA|G|683
8VVP|1|ZA|G|684
*
8VVP|1|ZA|U|918
8VVP|1|ZA|A|919
8VVP|1|ZA|A|920
8VVP|1|ZA|G|921
8VVP|1|ZA|A|922
8VVP|1|ZA|G|923
*
8VVP|1|ZA|C|1019
8VVP|1|ZA|A|1020
8VVP|1|ZA|U|1021
8VVP|1|ZA|U|1022
8VVP|1|ZA|A|1023
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain BC
- S27
- Chain HB
- eS7
- Chain LB
- S11
- Chain NB
- uS15
- Chain WB
- S15A
- Chain XB
- S23
Coloring options: