J3_8VVP_030

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVP_030 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.2045

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8VVP|1|ZA|A|816
8VVP|1|ZA|G|817
8VVP|1|ZA|A|818
8VVP|1|ZA|G|819
*
8VVP|1|ZA|C|829
8VVP|1|ZA|A|830
8VVP|1|ZA|G|831
*
8VVP|1|ZA|C|843
8VVP|1|ZA|U|844
8VVP|1|ZA|G|845
8VVP|1|ZA|G|846
8VVP|1|ZA|A|847
8VVP|1|ZA|U|848

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain YB

S24