J3_8VVR_005
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8VVR|1|WA|G|409, 8VVR|1|WA|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVR_005 not in the Motif Atlas
- Geometric match to J3_8CRE_006
- Geometric discrepancy: 0.1101
- The information below is about J3_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VVR|1|WA|U|380
8VVR|1|WA|U|381
8VVR|1|WA|G|382
8VVR|1|WA|A|383
8VVR|1|WA|A|384
8VVR|1|WA|A|385
8VVR|1|WA|A|386
8VVR|1|WA|G|387
8VVR|1|WA|A|388
8VVR|1|WA|A|389
8VVR|1|WA|C|390
*
8VVR|1|WA|G|401
8VVR|1|WA|A|402
8VVR|1|WA|G|403
8VVR|1|WA|U|404
8VVR|1|WA|U|405
8VVR|1|WA|C|406
8VVR|1|WA|A|407
8VVR|1|WA|A|408
8VVR|1|WA|G|409
8VVR|1|WA|A|410
8VVR|1|WA|G|411
8VVR|1|WA|G|412
8VVR|1|WA|G|413
8VVR|1|WA|C|414
8VVR|1|WA|G|415
*
8VVR|1|YA|C|19
8VVR|1|YA|A|20
Current chains
- Chain WA
- 28S rRNA
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain C
- uL4
- Chain KA
- eL39
- Chain O
- uL22
- Chain X
- L26
Coloring options: