J3_8VVR_021

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8VVR|1|WA|A|4940, 8VVR|1|WA|C|4942, 8VVR|1|WA|A|4945, 8VVR|1|WA|C|4946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVR|1|WA|G|4753
8VVR|1|WA|U|4754
8VVR|1|WA|U|4755
8VVR|1|WA|G|4756
*
8VVR|1|WA|C|4881
8VVR|1|WA|C|4882
8VVR|1|WA|U|4883
8VVR|1|WA|U|4884
8VVR|1|WA|C|4885
*
8VVR|1|WA|G|4938
8VVR|1|WA|C|4939
8VVR|1|WA|A|4940
8VVR|1|WA|C|4941
8VVR|1|WA|C|4942
8VVR|1|WA|G|4943
8VVR|1|WA|C|4944
8VVR|1|WA|A|4945
8VVR|1|WA|C|4946
8VVR|1|WA|G|4947
8VVR|1|WA|U|4948
8VVR|1|WA|U|4949
8VVR|1|WA|C|4950

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain EA

eL33

Chain L

eL14

Chain N

uL13