J3_8VVR_024
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 8VVR|1|YA|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVR_024 not in the Motif Atlas
- Homologous match to J3_8GLP_039
- Geometric discrepancy: 0.0955
- The information below is about J3_8GLP_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.3
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
8VVR|1|YA|A|44
8VVR|1|YA|C|45
*
8VVR|1|YA|G|58
8VVR|1|YA|A|59
8VVR|1|YA|G|60
8VVR|1|YA|A|61
8VVR|1|YA|A|62
8VVR|1|YA|U|63
8VVR|1|YA|U|64
*
8VVR|1|YA|A|95
8VVR|1|YA|C|96
8VVR|1|YA|A|97
8VVR|1|YA|C|98
8VVR|1|YA|U|99
Current chains
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain GA
- L35
- Chain IA
- L37
- Chain KA
- eL39
- Chain W
- uL23
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: