J3_8VVR_026

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*UAAGAG*CAUUA

Length

14 nucleotides

Bulged bases

8VVR|1|ZA|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVR_026 not in the Motif Atlas

Geometric match to J3_8CRE_074

Geometric discrepancy: 0.1582

The information below is about J3_8CRE_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.5

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VVR|1|ZA|U|682
8VVR|1|ZA|G|683
8VVR|1|ZA|G|684
*
8VVR|1|ZA|U|918
8VVR|1|ZA|A|919
8VVR|1|ZA|A|920
8VVR|1|ZA|G|921
8VVR|1|ZA|A|922
8VVR|1|ZA|G|923
*
8VVR|1|ZA|C|1019
8VVR|1|ZA|A|1020
8VVR|1|ZA|U|1021
8VVR|1|ZA|U|1022
8VVR|1|ZA|A|1023

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BC

S27

Chain HB

eS7

Chain LB

S11

Chain NB

uS15

Chain WB

S15A

Chain XB

S23