J3_8VVR_027

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVR_027 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.2222

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8VVR|1|ZA|A|816
8VVR|1|ZA|G|817
8VVR|1|ZA|A|818
8VVR|1|ZA|G|819
*
8VVR|1|ZA|C|829
8VVR|1|ZA|A|830
8VVR|1|ZA|G|831
*
8VVR|1|ZA|C|843
8VVR|1|ZA|U|844
8VVR|1|ZA|G|845
8VVR|1|ZA|G|846
8VVR|1|ZA|A|847
8VVR|1|ZA|U|848

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain YB

S24