J3_8VVS_001

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUGUAGCGGUUAUCACGU*AAGGUCC*GC

Length

30 nucleotides

Bulged bases

8VVS|1|UA|C|16, 8VVS|1|UA|G|17, 8VVS|1|UA|G|18, 8VVS|1|UA|U|19, 8VVS|1|UA|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|UA|G|7
8VVS|1|UA|U|8
8VVS|1|UA|A|9
8VVS|1|UA|G|10
8VVS|1|UA|U|11
8VVS|1|UA|G|12
8VVS|1|UA|U|13
8VVS|1|UA|A|14
8VVS|1|UA|G|15
8VVS|1|UA|C|16
8VVS|1|UA|G|17
8VVS|1|UA|G|18
8VVS|1|UA|U|19
8VVS|1|UA|U|20
8VVS|1|UA|A|21
8VVS|1|UA|U|22
8VVS|1|UA|C|23
8VVS|1|UA|A|24
8VVS|1|UA|C|25
8VVS|1|UA|G|26
8VVS|1|UA|U|27
*
8VVS|1|UA|A|43
8VVS|1|UA|A|44
8VVS|1|UA|G|45
8VVS|1|UA|G|46
8VVS|1|UA|U|47
8VVS|1|UA|C|48
8VVS|1|UA|C|49
*
8VVS|1|UA|G|65
8VVS|1|UA|C|66

Current chains

Chain UA

A-site tRNA

Nearby chains

Chain EC

S30

Chain HC

eukaryotic elongation factor 1 A

Chain WA

Large subunit ribosomal RNA; LSU rRNA

Chain XB

S23