J3_8VVS_002

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8VVS|1|WA|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|112
8VVS|1|WA|A|113
8VVS|1|WA|G|114
8VVS|1|WA|C|115
8VVS|1|WA|G|116
*
8VVS|1|WA|C|155
8VVS|1|WA|G|156
8VVS|1|WA|U|157
8VVS|1|WA|A|158
8VVS|1|WA|C|159
8VVS|1|WA|G|160
*
8VVS|1|WA|C|275
8VVS|1|WA|C|276
8VVS|1|WA|G|277
8VVS|1|WA|G|278

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

L7A

Chain GA

L35

Chain HA

L36

Chain K

eL13

Chain M

eL15