J3_8VVS_006

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8VVS|1|WA|C|705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|451
8VVS|1|WA|A|452
8VVS|1|WA|G|453
8VVS|1|WA|U|454
8VVS|1|WA|C|455
*
8VVS|1|WA|G|702
8VVS|1|WA|U|703
8VVS|1|WA|G|704
8VVS|1|WA|C|705
8VVS|1|WA|G|706
*
8VVS|1|WA|C|1294
8VVS|1|WA|G|1295
8VVS|1|WA|A|1296
8VVS|1|WA|U|1297
8VVS|1|WA|G|1298

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain E

L6

Chain EA

eL33

Chain PA

L28