J3_8VVS_021

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8VVS|1|WA|A|4940, 8VVS|1|WA|C|4942, 8VVS|1|WA|A|4945, 8VVS|1|WA|C|4946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|G|4753
8VVS|1|WA|U|4754
8VVS|1|WA|U|4755
8VVS|1|WA|G|4756
*
8VVS|1|WA|C|4881
8VVS|1|WA|C|4882
8VVS|1|WA|U|4883
8VVS|1|WA|U|4884
8VVS|1|WA|C|4885
*
8VVS|1|WA|G|4938
8VVS|1|WA|C|4939
8VVS|1|WA|A|4940
8VVS|1|WA|C|4941
8VVS|1|WA|C|4942
8VVS|1|WA|G|4943
8VVS|1|WA|C|4944
8VVS|1|WA|A|4945
8VVS|1|WA|C|4946
8VVS|1|WA|G|4947
8VVS|1|WA|U|4948
8VVS|1|WA|U|4949
8VVS|1|WA|C|4950

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain EA

eL33

Chain L

eL14

Chain N

uL13