J3_8VVS_025

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVS_025 not in the Motif Atlas

Geometric match to J3_8CRE_071

Geometric discrepancy: 0.1232

The information below is about J3_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVS|1|ZA|A|40
8VVS|1|ZA|G|41
*
8VVS|1|ZA|C|481
8VVS|1|ZA|G|482
8VVS|1|ZA|C|483
8VVS|1|ZA|A|484
8VVS|1|ZA|A|485
8VVS|1|ZA|A|486
8VVS|1|ZA|U|487
*
8VVS|1|ZA|A|512
8VVS|1|ZA|G|513
8VVS|1|ZA|U|514

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HC

eukaryotic elongation factor 1 A

Chain JB

S9

Chain XB

S23