J3_8VVS_027

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVS_027 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.2203

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8VVS|1|ZA|A|816
8VVS|1|ZA|G|817
8VVS|1|ZA|A|818
8VVS|1|ZA|G|819
*
8VVS|1|ZA|C|829
8VVS|1|ZA|A|830
8VVS|1|ZA|G|831
*
8VVS|1|ZA|C|843
8VVS|1|ZA|U|844
8VVS|1|ZA|G|845
8VVS|1|ZA|G|846
8VVS|1|ZA|A|847
8VVS|1|ZA|U|848

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain YB

S24