J3_8VVS_031
3D structure
- PDB id
- 8VVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVS_031 not in the Motif Atlas
- Geometric match to J3_8CRE_079
- Geometric discrepancy: 0.0959
- The information below is about J3_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVS|1|ZA|U|1225
8VVS|1|ZA|G|1226
8VVS|1|ZA|G|1227
8VVS|1|ZA|A|1228
*
8VVS|1|ZA|U|1530
8VVS|1|ZA|A|1531
8VVS|1|ZA|C|1532
*
8VVS|1|ZA|G|1638
8VVS|1|ZA|G|1639
8VVS|1|ZA|A|1640
8VVS|1|ZA|A|1641
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain FB
- S5
- Chain QB
- uS9
- Chain SA
- Transfer RNA; tRNA
- Chain SB
- S18
- Chain TA
- Transfer RNA; tRNA
- Chain TB
- S19
- Chain ZB
- eS25
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