J3_8VWQ_005
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 8VWQ|1|1|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VWQ_005 not in the Motif Atlas
- Geometric match to J3_5J7L_068
- Geometric discrepancy: 0.0573
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VWQ|1|1|G|297
8VWQ|1|1|G|298
8VWQ|1|1|A|299
8VWQ|1|1|A|300
8VWQ|1|1|G|301
*
8VWQ|1|1|C|316
8VWQ|1|1|G|317
8VWQ|1|1|C|318
8VWQ|1|1|G|319
8VWQ|1|1|A|320
8VWQ|1|1|U|321
8VWQ|1|1|A|322
8VWQ|1|1|C|323
8VWQ|1|1|A|324
8VWQ|1|1|G|325
*
8VWQ|1|1|C|337
8VWQ|1|1|G|338
8VWQ|1|1|U|339
8VWQ|1|1|A|340
8VWQ|1|1|C|341
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L24
Coloring options: