J3_8VWQ_006
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 8VWQ|1|1|U|686, 8VWQ|1|1|A|792, 8VWQ|1|1|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VWQ_006 not in the Motif Atlas
- Geometric match to J3_5J7L_038
- Geometric discrepancy: 0.0667
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VWQ|1|1|U|683
8VWQ|1|1|G|684
8VWQ|1|1|A|685
8VWQ|1|1|U|686
8VWQ|1|1|C|687
8VWQ|1|1|U|688
8VWQ|1|1|A|689
*
8VWQ|1|1|U|773
8VWQ|1|1|G|774
8VWQ|1|1|G|775
*
8VWQ|1|1|C|791
8VWQ|1|1|A|792
8VWQ|1|1|A|793
8VWQ|1|1|A|794
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
Coloring options: