J3_8VWQ_013
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8VWQ|1|1|A|2388, 8VWQ|1|1|U|2390, 8VWQ|1|1|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VWQ_013 not in the Motif Atlas
- Geometric match to J3_5J7L_070
- Geometric discrepancy: 0.071
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VWQ|1|1|G|2282
8VWQ|1|1|C|2283
8VWQ|1|1|A|2284
*
8VWQ|1|1|U|2384
8VWQ|1|1|C|2385
8VWQ|1|1|A|2386
8VWQ|1|1|U|2387
8VWQ|1|1|A|2388
8VWQ|1|1|G|2389
8VWQ|1|1|U|2390
8VWQ|1|1|G|2391
8VWQ|1|1|A|2392
8VWQ|1|1|U|2393
8VWQ|1|1|C|2394
8VWQ|1|1|C|2395
*
8VWQ|1|1|G|2421
8VWQ|1|1|C|2422
8VWQ|1|1|U|2423
8VWQ|1|1|C|2424
8VWQ|1|1|A|2425
8VWQ|1|1|A|2426
8VWQ|1|1|C|2427
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Elongation factor P
- Chain L
- 50S ribosomal protein L15
- Chain W
- Large ribosomal subunit protein bL27
- Chain c
- Large ribosomal subunit protein bL33
- Chain e
- 50S ribosomal protein L35
Coloring options: