J3_8VWQ_014
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 8VWQ|1|1|U|2334, 8VWQ|1|1|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VWQ_014 not in the Motif Atlas
- Geometric match to J3_5J7L_071
- Geometric discrepancy: 0.1184
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8VWQ|1|1|C|2295
8VWQ|1|1|U|2296
8VWQ|1|1|A|2297
8VWQ|1|1|A|2298
8VWQ|1|1|U|2299
*
8VWQ|1|1|A|2317
8VWQ|1|1|G|2318
8VWQ|1|1|G|2319
8VWQ|1|1|U|2320
8VWQ|1|1|U|2321
8VWQ|1|1|A|2322
8VWQ|1|1|G|2323
*
8VWQ|1|1|C|2332
8VWQ|1|1|A|2333
8VWQ|1|1|U|2334
8VWQ|1|1|A|2335
8VWQ|1|1|A|2336
8VWQ|1|1|G|2337
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain E
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- Large ribosomal subunit protein bL27
Coloring options: