J3_8VWQ_024

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VWQ_024 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.1044

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8VWQ|1|2|C|936
8VWQ|1|2|A|937
8VWQ|1|2|A|938
8VWQ|1|2|G|939
*
8VWQ|1|2|C|1344
8VWQ|1|2|U|1345
8VWQ|1|2|A|1346
8VWQ|1|2|G|1347
8VWQ|1|2|U|1348
8VWQ|1|2|A|1349
8VWQ|1|2|A|1350
*
8VWQ|1|2|U|1372
8VWQ|1|2|G|1373
8VWQ|1|2|A|1374
8VWQ|1|2|A|1375
8VWQ|1|2|U|1376
8VWQ|1|2|A|1377
8VWQ|1|2|C|1378
8VWQ|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Elongation factor P

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9