J3_8W2N_025

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8W2N_025 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.0886

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8W2N|1|2|C|936
8W2N|1|2|A|937
8W2N|1|2|A|938
8W2N|1|2|G|939
*
8W2N|1|2|C|1344
8W2N|1|2|U|1345
8W2N|1|2|A|1346
8W2N|1|2|G|1347
8W2N|1|2|U|1348
8W2N|1|2|A|1349
8W2N|1|2|A|1350
*
8W2N|1|2|U|1372
8W2N|1|2|G|1373
8W2N|1|2|A|1374
8W2N|1|2|A|1375
8W2N|1|2|U|1376
8W2N|1|2|A|1377
8W2N|1|2|C|1378
8W2N|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Elongation factor P

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9