J3_8W2N_035
3D structure
- PDB id
- 8W2N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8W2N|1|3|U|14, 8W2N|1|3|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8W2N_035 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.1083
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8W2N|1|3|G|10
8W2N|1|3|C|11
8W2N|1|3|C|12
8W2N|1|3|G|13
8W2N|1|3|U|14
8W2N|1|3|A|15
8W2N|1|3|G|16
*
8W2N|1|3|C|68
8W2N|1|3|G|69
8W2N|1|3|C|70
*
8W2N|1|3|G|106
8W2N|1|3|G|107
8W2N|1|3|A|108
8W2N|1|3|A|109
8W2N|1|3|C|110
Current chains
- Chain 3
- 5S mRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
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